Automated Nucleus Segmentation in Histology Images: An Attention U-Net Approach with Comprehensive Preprocessing and Inference Pipelines

automated-nucleus-segmentation-in-histology-images:-an-attention-u-net-approach-with-comprehensive-preprocessing-and-inference-pipelines

Automated Nucleus Segmentation in Histology Images: An Attention U-Net Approach with Comprehensive Preprocessing and Inference Pipelines

[Submitted on 22 Oct 2026]

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Abstract:Objectives: In the area of digital pathology, nucleus segmentation is an essential step for quantitative analysis; however, high nuclear density and staining heterogeneity in histology images pose a great challenge.
Methods: This study implements a lightweight Attention U-Net model on the MoNuSeg 2018 dataset to overcome these challenges. The proposed pipeline integrates comprehensive image and mask preprocessing, including stain deconvolution and multi-pass mask smoothing, with a high-fidelity overlapping patch-stitching strategy during inference on high-resolution images.
Results: The model achieved an Intersection over Union (IoU) score of 0.8745 on full-resolution, unseen test images. This result demonstrates the effectiveness of attention mechanisms in enhancing feature localization and validates the stitching methodology for generating seamless and accurate segmentation maps.
Conclusion: Attention U-Net is an effective and competitive method for automated, scalable nucleus delineation in challenging clinical contexts.

Submission history

From: Akshat Gururaj [view email]
[v1] Thu, 22 Oct 2026 20:57:54 UTC (6,360 KB)